31 March 98
by N.Guex
References
As several people have asked me how they should cite Swiss-PdbViewer, I have included references. You must at least use the third one.
The first one is a published abstract, the second one comes from the PDB newsletter. The third one is description of the homology modelling capabilities of Swiss-PdbViewer used in conjunction to the SWISS-MODEL server.It also gives a detailed example of what accuracy level you can expect from a model, and should be very instructive to people not familiar with protein modelling.
- Guex, N.(1996)
Swiss-PdbViewer: A new fast and easy to use PDB viewer for the Macintosh.
Experientia 52, pp. A26.
- Guex, N and Peitsch, M.C.(1996)
Swiss-PdbViewer: A Fast and Easy-to-use PDB Viewer for Macintosh and PC.
Protein Data Bank Quaterly Newsletter 77, pp. 7.
- Guex, N. and Peitsch, M.C. (1997)
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling.
Electrophoresis 18, 2714-2723.
http://www.expasy.ch/spdbv/mainpage.htm
- Weiner, S.J., Kollman, P.A., Case, D.A., Singh, U.C.,
Ghio, C., Alagona, G., Profeta, S.,Weiner, P.K.(1984)
A new force field for molecular mechanical simulation of nucleic acids proteins.
J. Am. Chem. Soc. 106,765-784.
- Morris, A.L., MacArthur, M.W., Hutchinson, E.G.,
Thornton, J.M.(1992)
Stereochemical Quality of Protein Structure Coordinates.
PROTEINS: Structure, Function, and Genetics 12,345-364.
- Carson, M. (1987)
Ribbon model of macromolecules.
J. mol. Graphics. 5,103-106.
- Vriend G. (1987,1993,1997)
whatcheck (html), whatcheck (ftp), whatcheck (ftp).
- Huang, X., Miller, M. (1991)
A Time-Efficient, Linear-Space Local Similarity Algorithm
Adv. Appl. Math. 12,337-357.
- Sippl, J.M. (1990)
Calculation of Conformational Ensembles from Potentials of Mean Force: an approach to the knowledge based prediction of local structures in globular proteins.
J. Mol. Biol. 213,859-883.