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CCP4i: Graphical User Interface |
| Model Building Module |
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- The Model Building module contains the following tasks:
- FFFear - Fragment Searching
- FFJoin - Merge fragments
- XtalView/xfit
- warpNtrace - only available direct from the author(s)
The layout of each task window, i.e. the number of folders present, and whether these folders are open or closed by default, depends on the choices made in the Protocol folder of the task (see Introduction). Although certain folders are closed by default, there are specific reasons why you should or may want to look at them. These reasons are described in the Task Window Layout sections below.
FFFear - Fragment Searching
FFFear - Task Window Layout
See program documentation: FFFEAR.
FFJoin - Merge fragments
FFJoin - Task Window Layout
See program documentation: FFJOIN.
XtalView/xfit
This is a launcher for the XtalView package which is NOT distributed by CCP4. The interface will extract the crystal data from any PDB or map file selected (and use that from the last file selected) to create an xfit crystal file (project_dir/n_xfit_xfit.xtal) where project_dir is the project directory and n is the job number. The script will convert the CCP4 map files to xfit .fs files and create a xfit macro file (project_dir/n_xfit.script) which contains the commands to load the .fs files and PDB files. CCP4i will then start XtalView.
XtalView/xfit - Task Window Layout
See program documentation: XtalView.
See also:
WWW O - The official
WWW server for users of the O protein crystallographic package.
QUANTA.
XtalView - A complete package for solving a macromolecular
crystal structure by isomorphous replacement, including building the molecular model.
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