ROTGEN - Rotation Image Prediction and Analysis
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Rotgen Montage
Version Number: 3.0
(see also Details of Updates)
John W. Campbell, CCLRC Daresbury Laboratory
CONTENTS
1.1 INTRODUCTION
1.2 Running the Program
1.3 Introduction to XDL_VIEW
1.4 Screen Layout
1.5 Some Basic Concepts
1.6 Outline of the Main Options
1.7 The Command Window
1.8 References
2.1 INTRODUCTION
2.2 The 'Read Parameters File' Option
2.3 The 'Read Matrix File' Option
2.4 The 'Write Matrix File' Option
2.5 The 'Write Parameters File' Option
2.6 Usaved Parameters Warning on Quit
3.1 INTRODUCTION
3.2 Selection of the image
3.3 Orientation of the Simulations
3.4 The Colour Display
3.5 The Interactive Display
4.1 INTRODUCTION
4.2 Inputting the Data
4.3 Using the MTZ Data in Analyses
4.4 Resolution for Data Analyses
5.1 INTRODUCTION
5.2 Full Analyses
5.3 Quick Analyses
5.4 MTZ Data
5.5 Overlaps
5.6 Requesting the Analysis
5.7 Examining the Results
5.7.1 Introduction
5.7.2 Show Reciprocal Lattice
5.7.3 Show Graphical Plots
5.7.4 Log Analyses with Overlaps
6.1 INTRODUCTION
6.2 Requesting the Strategy Option
6.2.1 Introduction
6.2.2 Maximising Unique Data or Acentric Pairs
6.2.3 Analysing Overlaps
6.3 The Strategy Method for Maximising Data Coverage
6.4 Examining the Results from Strategy Maximisations
6.4.1 Introduction
6.4.2 The Strategy Results Window
6.4.3 Choosing Multiple Segments
6.4.4 Analysing the Results
6.4.5 Accepting a Solution
6.5 Logging of the Results of Maximisations
1.1 INTRODUCTION
1.2 Symmetry Operators File
1.3 Fonts
1.4 Program Modes
1.5 Compiling and Linking ROTGEN
2.1 INTRODUCTION
2.2 Handling the Keyworded Parameters
2.3 Summary of Keyworded Parameters
2.4 Detailed Specification of the Parameters
2.5 Standard Set of Output Parameters
2.6 The NUMIMG parameter
3.1 INTRODUCTION
3.2 Contents of the Log File
3.3 Key to Analysis Tables
4.1 INTRODUCTION
5.1 INTRODUCTION
5.2 The Procedure
FIGURES: CHAPTER 1
1.1 Main Screen of ROTGEN
FIGURES: CHAPTER 3
3.1 Example of a Colour Rotation Simulation
3.2 Example of an Interactive Rotation Simulation
FIGURES: CHAPTER 5
5.1 Example of 'Show Unique Coverage' View-object
5.2 Example of a Unique Data Coverage Graph
FIGURES: CHAPTER 6
6.1 Example of a Strategy Results Table
FIGURES: APPENDIX 4
4.1 The Laboratory Axes used by ROTGEN
John W. Campbell
CCLRC Daresbury Laboratory
Last update 24 Oct 1997
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